msaReader.h File Reference

This file contains the declaration of the MSAReader class and its derived classes. More...

#include <vector>
#include <string>
#include <iostream>
#include "common.h"

Go to the source code of this file.

Classes
class	MSAReader
class	MSAReader_a2m
class	MSAReader_a3m
class	MSAReader_sto
class	MSAReader_fasta
class	MSAReader_clustal
class	MSAReader_aln
class	MSAReader_pfam

Detailed Description

This file contains the declaration of the MSAReader class and its derived classes.

The MSAReader class provides functionality to read multiple sequence alignments (MSA) from different file formats. It supports reading MSAs in a2m, a3m, stockholm, fasta, clustal, pfam and aln formats. The MSAReader class is an abstract base class, and the derived classes provide specific implementations for each format.