This file contains the implementation of the MSAWriter class and its derived classes. More...

#include <iostream>
#include <vector>
#include <string>
#include <fstream>
#include <iomanip>
#include "common.h"
#include "msaWriter.h"
#include <set>

Detailed Description

This file contains the implementation of the MSAWriter class and its derived classes.

The MSAWriter class provides functionality to write multiple sequence alignments (MSA) to different file formats. It supports writing MSAs in a2m, a3m, stockholm, fasta, clustal, pfam and aln formats. The MSAWriter class is an abstract base class, and the derived classes provide specific implementations for each format.