MSAWriter_aln Class Reference

#include <msaWriter.h>

Inheritance diagram for MSAWriter_aln:

Public Member Functions
	MSAWriter (std::vector< Sequence > sequences, std::string file)
	Constructor.
Public Member Functions inherited from MSAWriter
	MSAWriter (std::vector< Sequence > sequences, std::string file)
	Constructor.
void	write ()
	Write sequences in the MSA file, based on the format of the output file.

Private Member Functions
void	writeFile (std::ofstream &file) override

Additional Inherited Members
Protected Member Functions inherited from MSAWriter
void	generateIdForSequences ()
	Generate IDs for sequences that do not have any ID.
Protected Attributes inherited from MSAWriter
std::string	file
std::string	fileName
std::string	format
std::vector< Sequence >	Sequences
int	IDspace

Member Function Documentation

MSAWriter()

MSAWriter::MSAWriter	(	std::vector< Sequence >	sequences,
		std::string	file )

Constructor.

Parameters

sequences
file

writeFile()

void MSAWriter_aln::writeFile ( std::ofstream & file )

overrideprivatevirtual

Implements MSAWriter.

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The documentation for this class was generated from the following files:

• code/msaWriter.h
• code/msaWriter.cpp