msaWriter.h File Reference

This file contains the declaration of the MSAWriter class and its derived classes. More...

#include <vector>
#include <string>
#include <iostream>
#include <set>
#include "common.h"

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Classes
class	MSAWriter
class	MSAWriter_a2m
class	MSAWriter_a3m
class	MSAWriter_sto
class	MSAWriter_fasta
class	MSAWriter_clustal
class	MSAWriter_aln
class	MSAWriter_pfam

Detailed Description

This file contains the declaration of the MSAWriter class and its derived classes.

The MSAWriter class provides functionality to write multiple sequence alignments (MSA) to different file formats. It supports writing MSAs in a2m, a3m, stockholm, fasta, clustal, pfam and aln formats.

The MSAWriter class is an abstract base class, and the derived classes provide specific implementations for each format.